Course modules

Lectures 2017

Lectures 2017 Lectures 2017

Attachment

PoB/FoB lecture 1: Introduction PoB/FoB lecture 1: Introduction 1

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Attachment

PoB/FoB lecture 1: Introduction part 2 PoB/FoB lecture 1: Introduction part 2 2

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Attachment

PoB_FoB_lec2_2017.pdf PoB_FoB_lec2_2017.pdf 3

attachment 40544 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

PoB_FoB_lec3_2017.pdf PoB_FoB_lec3_2017.pdf 4

attachment 41002 0

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Attachment

PoB_FoB lecture 4: Data PoB_FoB lecture 4: Data 5

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Attachment

PoB/FoB lec5 2017 Benchmarking (answers) PoB/FoB lec5 2017 Benchmarking (answers) 6

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Attachment

PoB_FoB_lec6_2017_Profiles_structures.pdf PoB_FoB_lec6_2017_Profiles_structures.pdf 7

attachment 44148 0

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Attachment

PoB_FoB_lec7_2017_Sequencing.pdf PoB_FoB_lec7_2017_Sequencing.pdf 8

attachment 46550 0

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Attachment

PoB FoB lec8 2017 Sequence entropy and Specificity PoB FoB lec8 2017 Sequence entropy and Specificity 9

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Attachment

fob_lec9_2017_ScientificWriting.pdf fob_lec9_2017_ScientificWriting.pdf 10

attachment 134508 0

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Attachment

PoB_FoB lecture 10 2017 highlight seeing the trees through the forest - RF PPI prediction of IF residues.pdf PoB_FoB lecture 10 2017 highlight seeing the trees through the forest - RF PPI prediction of IF residues.pdf 11

attachment 49323 0

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Attachment

PoB_FoB lecture 10 2017 highlight Cico Zhang Data In Bioinformatics - EGA - galaxy - transMART .pdf PoB_FoB lecture 10 2017 highlight Cico Zhang Data In Bioinformatics - EGA - galaxy - transMART .pdf 12

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Attachment

PoB_FoB lecture 10 2017 highlight Maurits Dijkstra - motif-aware alignment.pdf PoB_FoB lecture 10 2017 highlight Maurits Dijkstra - motif-aware alignment.pdf 13

attachment 50278 0

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Page

PoB_FoB lecture 10 2017 research highlight - recordings PoB_FoB lecture 10 2017 research highlight - recordings 14

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Attachment

PoB_FoB_lec11_2017_Outlook.pdf PoB_FoB_lec11_2017_Outlook.pdf 15

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Preparatory reading

Preparatory reading Preparatory reading

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Understanding Bioinformatics by Zvelebil and Baum Understanding Bioinformatics by Zvelebil and Baum 1

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Page

Some helpful intro casts Some helpful intro casts 2

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Assignment

Reading for lecture 2: chapter 1 of Molecular Biology intro by Larry Hunter Reading for lecture 2: chapter 1 of Molecular Biology intro by Larry Hunter 3

assignment 35827 1

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Assignment

Reading before lecture 3: pairwise alignment and blast Reading before lecture 3: pairwise alignment and blast 4

assignment 35828 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Reading before lecture 4: Data Reading before lecture 4: Data 5

assignment 38183 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Reading before lecture 5: Benchmarking Reading before lecture 5: Benchmarking 6

assignment 38184 1

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Assignment

Reading before lecture 6: Structures & Profiles Reading before lecture 6: Structures & Profiles 7

assignment 38185 1

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Assignment

Reading before lecture 7: Sequencing Reading before lecture 7: Sequencing 8

assignment 38186 1

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Assignment

Reading before lecture 8: Sequence Entropy and Harmony Reading before lecture 8: Sequence Entropy and Harmony 10

assignment 45412 1

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Assignment

Reading before lecture 9: Scientific Writing Reading before lecture 9: Scientific Writing 11

assignment 45572 1

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Project

Project Project

Attachment

FoB_Tech_Manual.pdf FoB_Tech_Manual.pdf 1

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Attachment

FoB_project_tutorial_2017.pdf FoB_project_tutorial_2017.pdf 2

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Assignment

Choose the database: SCOP, Pfam or GO Choose the database: SCOP, Pfam or GO 3

assignment 40978 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Reading before lecture 9: Scientific Writing Reading before lecture 9: Scientific Writing 4

assignment 45577 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Draft Project Report Draft Project Report 0 5

assignment 15206 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Criteria for draft report peer review Criteria for draft report peer review 6

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Assignment

Draft report peer review Draft report peer review 7

assignment 35904 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Final FoB Project Report Final FoB Project Report 100 8

assignment 15289 1

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Attachment

All reports.zip All reports.zip 9

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Assignment

Project presentations Project presentations 100 10

assignment 35905 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Choose the database: SCOP, Pfam or GO Choose the database: SCOP, Pfam or GO 11

assignment 41519 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Project grade Project grade 100 12

assignment 51901 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Presentation Schedule Fri 27/10 Presentation Schedule Fri 27/10 13

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Programming Class

Programming Class Programming Class

Attachment

Programming class_Tutorial1.pdf Programming class_Tutorial1.pdf 1

attachment 36877 0

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Attachment

Programming class_Tutorial2.pdf Programming class_Tutorial2.pdf 2

attachment 37866 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Programming class_Tutorial3.pdf Programming class_Tutorial3.pdf 3

attachment 40908 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Programming class_Tutorial4.pdf Programming class_Tutorial4.pdf 4

attachment 40909 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Programming class_Tutorial5.pdf Programming class_Tutorial5.pdf 5

attachment 41747 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Programming class_Tutorial6.pdf Programming class_Tutorial6.pdf 6

attachment 46759 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Python-Cheat-Sheet.pdf Python-Cheat-Sheet.pdf 7

attachment 49193 0

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Attachment

go.zip go.zip 8

attachment 46760 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

programming test programming test 170 9

assignment 35902 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

programming final test programming final test 100 10

assignment 35903 1

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Assignment

Programming Class grade Programming Class grade 100 11

assignment 51899 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Linux_Survival.pdf Linux_Survival.pdf 12

attachment 36875 0

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Attachment

linux-exercise.zip linux-exercise.zip 13

attachment 37038 0

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Page

Working at home or on your own laptop Working at home or on your own laptop 14

wiki_page 37262 0

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Attachment

linux_bash_windows_10.pdf linux_bash_windows_10.pdf 15

attachment 41018 0

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Attachment

Programming class_useful_links.pdf Programming class_useful_links.pdf 17

attachment 45406 0

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Attachment

codon_table.txt codon_table.txt 18

attachment 46485 0

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Biology Class

Biology Class Biology Class

Attachment

Keywords Essential Cell Biology.pdf Keywords Essential Cell Biology.pdf 1

attachment 41135 0

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Attachment

ECB3e_Chapter_01 & 02.pptx ECB3e_Chapter_01 & 02.pptx 2

attachment 41410 0

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Attachment

ECB3e_Chapter_03 & 04.pptx ECB3e_Chapter_03 & 04.pptx 3

attachment 41411 0

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Attachment

ECB3e_Chapter_05.pptx ECB3e_Chapter_05.pptx 4

attachment 43692 0

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Attachment

ECB3e_Chapter_06.pptx ECB3e_Chapter_06.pptx 5

attachment 43693 0

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Attachment

ECB3e_Chapter_07.pptx ECB3e_Chapter_07.pptx 6

attachment 46333 0

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Attachment

ECB3e_Chapter_08.pptx ECB3e_Chapter_08.pptx 7

attachment 46334 0

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Attachment

ECB3e_Chapter_11.pptx ECB3e_Chapter_11.pptx 8

attachment 48146 0

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Attachment

ECB3e_Chapter_12.pptx ECB3e_Chapter_12.pptx 9

attachment 48147 0

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Attachment

ECB3e_Chapter_13.pptx ECB3e_Chapter_13.pptx 10

attachment 50200 0

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Attachment

ECB3e_Chapter_14.pptx ECB3e_Chapter_14.pptx 11

attachment 50201 0

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Attachment

ECB3e_Chapter_15.pptx ECB3e_Chapter_15.pptx 12

attachment 52798 0

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Attachment

ECB3e_Chapter_16.pptx ECB3e_Chapter_16.pptx 13

attachment 52799 0

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Attachment

ECB3e_Chapter_16_2.pptx ECB3e_Chapter_16_2.pptx 14

attachment 55129 0

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Attachment

MBoC6e_ch16+ch17_lecture, Cell cycle & Cytoskeleton.pptx MBoC6e_ch16+ch17_lecture, Cell cycle & Cytoskeleton.pptx 15

attachment 55131 0

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Assignment

Biology final test Biology final test 100 16

assignment 43190 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Biology mid-term test Biology mid-term test 100 17

assignment 44164 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Keywords Essential Cell Biology.pdf Keywords Essential Cell Biology.pdf 18

attachment 55130 0

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Attachment

answers example exam questions.docx answers example exam questions.docx 19

attachment 48148 0

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Attachment

answers for questions.docx answers for questions.docx 20

attachment 55134 0

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Exam preparation

Exam preparation Exam preparation

Page

Exam information Exam information 1

wiki_page 46739 0

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Page

Exams from previous years Exams from previous years 2

wiki_page 46740 0

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Attachment

ExamSB18 - FOR STUDENTS (1).pdf ExamSB18 - FOR STUDENTS (1).pdf 3

attachment 106722 0

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Lectures last year (2016)

Lectures last year (2016) Lectures last year (2016)

Page

Lectures 1-3 - Introduction, Evolution, Alignment Lectures 1-3 - Introduction, Evolution, Alignment 1

wiki_page 14303 0

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Attachment

Lecture 4 - Data in the Life Sciences Lecture 4 - Data in the Life Sciences 2

attachment 14304 0

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Lecture 5 - Homology detection and Benchmarking Lecture 5 - Homology detection and Benchmarking 3

attachment 14305 0

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Lecture 6 - Structure & Profiles Lecture 6 - Structure & Profiles 4

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Lecture 7 - Sequencing & Assembly Lecture 7 - Sequencing & Assembly 5

attachment 14307 0

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Lecture 8 - Multiomics and Function Lecture 8 - Multiomics and Function 6

attachment 14308 0

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Lecture 9 - Writing Lecture 9 - Writing 7

attachment 14309 0

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Page

Lecture 10 - Research Highlights Lecture 10 - Research Highlights 8

wiki_page 14310 0

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Course information

Course information Course information

Page

Course and Grading Rules Course and Grading Rules 1

wiki_page 35886 0

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Page

Overview Course Schedule Overview Course Schedule 2

wiki_page 35887 0

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External URL

Cursusbeschrijving / Course Description Cursusbeschrijving / Course Description 3

external_url 35883 0

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete